Protein Info for BPHYT_RS04550 in Burkholderia phytofirmans PsJN

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 TIGR03353: type VI secretion protein, VC_A0114 family" amino acids 5 to 447 (443 residues), 481.7 bits, see alignment E=9.8e-149 PF05936: T6SS_VasE" amino acids 20 to 446 (427 residues), 484.8 bits, see alignment E=1.1e-149

Best Hits

KEGG orthology group: K11893, type VI secretion system protein ImpJ (inferred from 100% identity to bpy:Bphyt_0936)

Predicted SEED Role

"Uncharacterized protein ImpJ/VasE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0M2 at UniProt or InterPro

Protein Sequence (447 amino acids)

>BPHYT_RS04550 type VI secretion protein (Burkholderia phytofirmans PsJN)
MSWYNKVTWSEGLFLRPQLFQQQERYLEHFAHKRAAPLSPFFFGFSHYAIDNEALALGKV
ILKSASGVFADGTPFDSPGNTPPPAPLTVRAEHLDQVIHLAVSIRVPNAEETTFDESSHS
LARYAVFDTDLRDTNSVGQGPKAVQLSNLRLRLVPQKEMTDAWIGLPLTRVKTLRADGSI
ELDDTLVPPVSGYGANALLTSWLAKVHDLTRLRADALAKRLTGSDGQAGTVAEVSDYLLL
QTLNRYEPLLQHLRRVPTTSPADLYALLLSMAGELSTYVRPQTRRPLESHPPYQHIEPHL
CLKPVVDDTHWLLNAVLVRSAQSIPFTDAGYGMRNAVVDPAEIRSFSSLVLAVSAQMPPD
TLVQQFAMQAKMGPSERLPDLVRSHLPGIALQALPVPPRQIPFNAGYVYYELSRTGPLWE
TVAQHGGIALHVAGDFPALRLELWGVR