Protein Info for BPHYT_RS04525 in Burkholderia phytofirmans PsJN

Annotation: amino acid ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 183 to 205 (23 residues), see Phobius details PF00497: SBP_bac_3" amino acids 44 to 260 (217 residues), 184 bits, see alignment E=2.8e-58 PF09084: NMT1" amino acids 79 to 191 (113 residues), 22.2 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: K02030, polar amino acid transport system substrate-binding protein (inferred from 100% identity to bpy:Bphyt_0931)

Predicted SEED Role

"ABC-type amino acid transport/signal transduction systems, periplasmic component/domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0P8 at UniProt or InterPro

Protein Sequence (267 amino acids)

>BPHYT_RS04525 amino acid ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MTRSILRPARRAWLAALLLSPVLAVNAPAAHADTLDNIAKAGVLKVAVPEDYPPFGSVGA
DMKPQGYDIDTAALLAKSMNVKLELVPVNSANRIPYLQTGKVDLVISSLGKTPDREKVID
FSTAYAPYYQGVFGPADIKVSGPADLTGKTVGATRGALEEIGLTQMAPNATIKRFEDNNA
TIAAFLSGQVQLIAAGNIVAAAILAKNPPRRPEPKFVIKNSPCFVGMNKNEPRLQQKVNA
AIAQAKQDGTLNTMSKKWFSAPLPADL