Protein Info for BPHYT_RS04465 in Burkholderia phytofirmans PsJN

Annotation: polysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 89 to 117 (29 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details amino acids 269 to 286 (18 residues), see Phobius details amino acids 301 to 324 (24 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 366 to 387 (22 residues), see Phobius details amino acids 393 to 414 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 18 to 284 (267 residues), 40.6 bits, see alignment E=3.3e-14 PF13440: Polysacc_synt_3" amino acids 39 to 336 (298 residues), 37.9 bits, see alignment E=1.9e-13

Best Hits

KEGG orthology group: K03328, polysaccharide transporter, PST family (inferred from 100% identity to bpy:Bphyt_0919)

Predicted SEED Role

"Membrane protein involved in the export of O-antigen and teichoic acid"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0N6 at UniProt or InterPro

Protein Sequence (420 amino acids)

>BPHYT_RS04465 polysaccharide biosynthesis protein (Burkholderia phytofirmans PsJN)
MLTLKRFANPDVTRAFTNIVWLGLERLTQIGVAIVISGVLARYFGPDTFGKWQYANTLLL
VLSPITWVCGAEILVPTIVNRPPAQLGTVLGSAFALRIAVSVAALLLTWLGIALHFFDPL
VGAMLAGLAVTMLFREPFVGVINAWLQSMTHSKPQLLTSMSTAVLKAALVYLLVRAAAAP
ARFGWLWALESAAIGAVLLIYYIRRHGGKLGWHLDRSLFKHFASAGTVFWLGLICMYLFL
KLDRLMLERTISFADLGRYSAAQQLNENWITLALMLAQTIAPAFVYRVQEAAQLRRNMWR
LTAMTAALMVSGAIVLDLLAGLIIRRVFGPQFEGAIDIFRWAVWLSVPAGIEAIGNLIVL
KYQAKFVLLAKWLLALAVAFVVNLLAIPRLGAYGALVGLAAGYLAAALVNLYYIRFKLRP