Protein Info for BPHYT_RS04310 in Burkholderia phytofirmans PsJN

Annotation: group 1 glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1350 PF13439: Glyco_transf_4" amino acids 949 to 1093 (145 residues), 51.7 bits, see alignment E=2.2e-17 PF00534: Glycos_transf_1" amino acids 1109 to 1239 (131 residues), 83.7 bits, see alignment E=2.3e-27 PF13692: Glyco_trans_1_4" amino acids 1120 to 1244 (125 residues), 67.8 bits, see alignment E=2.6e-22 PF20706: GT4-conflict" amino acids 1129 to 1235 (107 residues), 28.6 bits, see alignment E=1.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0887)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0K2 at UniProt or InterPro

Protein Sequence (1350 amino acids)

>BPHYT_RS04310 group 1 glycosyl transferase (Burkholderia phytofirmans PsJN)
MTVFSSHDVRACLRQCVTCFGHGRILYIGAHAADALDFLLAAGTDPYALSLDADGGAQAD
HRFVSDRLEAASVAAPALDFARRESFDAAIVILPQNSVAADASTWLQLIAQAGIRNVALV
TAVAQNRTDAASAGQTKKQAFELGFRIHARSTFARLTHPLPPLGGYEVCAFERAANASAE
RHPAPAEDILWHIDPASQTAVAEFTQIDGFVRVGDTVLVLDDTAGSGAYIVAQNSIARHV
LGIVLDASRCGYASTQYGEAGRVDFKPWASDALHTLASHSFDVVICRDLRCFAPLDWARL
ADIVRPGGRLILGLQAPESAGDASVALQSPVELLRASTGSTHASWLPEGAFILPPGAPSD
VAWRKMALDERLVASDGHLIVVSMRDPVGADASAFVDTMYQHADSPAFNVLPDARSMVNP
WLFRSMVTIGTRMNNDAELGSLQARVLEQAPHDTADYGAALCGHAYRVLAARASTDTVRT
CVAEIQAYLDTNKKDAQYLRWSISQSYVAAKLLQAVGDLEGAEAWALTCAAMDPVPFSPL
LTTKTVAALDLAASFAVARRDYEAARRYLERAVREVQRVLSGDWVNILGDTAKPLSFGLP
EVSQLAELGARCAYLLNYLADAEYRPGLVWREHRGFYERVFEAKDTQLEALLDRNTFLYG
ETQRLEDVVLQLKGEADRLEGVIRQGKDEEARLEAVIGEKDREVAALTQTVAAGEAEKTR
LAAALNEQVLTSEALRAAVARTLKARLLRATRALSRRLGMTGRARQPAPAAAPPAPVPAP
VKRFPNAPLLLDGGRVAQWLGQFDADAPRWVSSQALASVLPESERSTGDLNAPDAQLKII
AAADLRSLAPQAPGVVIVAVFEAGDNPYALRSDVYDHVDLCIALDHKVFLGLALLHPMVI
EAAPANVVDSARRFWKAINSTQPLIVPDAPAFNPPVSPVVMLQVDSFMVGGLERVVFDLL
DRLGKAGFKPMLGVTGDVATEAEAELKQRQFDYVRLPGDPAELRAVLVERKVALVNAHYS
LTLSDMCASLKIPFVQTVHNMYMWLDAAGKEQWRRVDEVTDAYICVSANVAMFADVNLRL
SAERMIVVPNGCDSGSAMPLLEPERDLALREELGFPADSPVFVNVASINPVKGQGLLIDA
FAIAHAKRPDIRLVILGKHSDAGYAARLQERIAHHGLQGVVSMPGYRSDVYRFVDLARAV
VMPSFTEGWSLAISETLQRNAPVIATDVGGAREQLIGEANTVIRAYRDDWSTLDGAEFYQ
AIANEWELHAVRDELARTMVEHAGRPVRQPRESLQQSFQSMTPTEAYTRHAEIFAAILTR
TNADCVRYASYLPQRQSRYFKLTDARPEVV