Protein Info for BPHYT_RS04015 in Burkholderia phytofirmans PsJN

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 transmembrane" amino acids 85 to 104 (20 residues), see Phobius details amino acids 110 to 128 (19 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 15 to 202 (188 residues), 98.9 bits, see alignment E=8e-32 PF13439: Glyco_transf_4" amino acids 16 to 206 (191 residues), 43.7 bits, see alignment E=6.1e-15 PF00534: Glycos_transf_1" amino acids 217 to 381 (165 residues), 56.6 bits, see alignment E=4.8e-19 PF13692: Glyco_trans_1_4" amino acids 227 to 369 (143 residues), 56.4 bits, see alignment E=8.6e-19

Best Hits

KEGG orthology group: K03208, colanic acid biosynthesis glycosyl transferase WcaI (inferred from 100% identity to bpy:Bphyt_0824)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0E1 at UniProt or InterPro

Protein Sequence (450 amino acids)

>BPHYT_RS04015 glycosyl transferase (Burkholderia phytofirmans PsJN)
MKILIYGINYAPELTGVGKYTAEMAVLLASRGHDVRVVCAPPYYPEWRVGEGYASWRYQH
ETRDGVAIWRAPLWVPAHPSGLKRMLHLASFAATSLPLLVRHVLWRPHAVMLIAPTLMCA
PGALMLARVTRARAWLHIQDYEVDAAFDLGLLKSSLAARVARWVESALLRRFDAVSSITR
QMSERATTKGVDASKVVCLPNWVDVATIFPLTRPSEFRRLLGIPDDRKVILYSGNMGAKQ
GIETLADAAVALAARTDLTFVFCGSGAAKEDLRQRCAGLTNCVFLPLQPLDRLNELLNLA
DIHVLPQRGDAADLVMPSKLTGMFASGRATVAMARRGTALYEAVAPRGVVVPPDNLKALT
AAITALTNDAERRAALGKAARVYAEQTLSPESTIRTFEERLAMLLREVGGKRDKLYKRGK
GGTPSFAARPSGAAARRRRKPATAEEAAPD