Protein Info for BPHYT_RS03920 in Burkholderia phytofirmans PsJN

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 42 to 64 (23 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 155 to 180 (26 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details PF01810: LysE" amino acids 16 to 207 (192 residues), 77.8 bits, see alignment E=4e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0804)

Predicted SEED Role

"Putative threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0C1 at UniProt or InterPro

Protein Sequence (213 amino acids)

>BPHYT_RS03920 lysine transporter LysE (Burkholderia phytofirmans PsJN)
MSTTSLFLTAAGVGLAIAAPVGPMGMLCIRRTLTGGPRAGLAIGFGIATGDAAYGLIAAL
GLVSISQFMLAYDRPLHLLAGLFLLYLGVRTLLQKVPADASTGEGNGKLAQVGRAGALRA
YASSLLLTLTNPQTVIMFAALFTTLAPRGAFSSSIALTTVGGVFCGSIAWWCFLVTVVSL
ARHAIGSKLRVAIDKIVGFTLAAFGVVEIRRAL