Protein Info for BPHYT_RS03870 in Burkholderia phytofirmans PsJN
Updated annotation (from data): xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4)
Rationale: Specific phenotype: utilization of Deoxyribonucleic acid
Original annotation: aldehyde oxidase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K13482, xanthine dehydrogenase large subunit [EC: 1.17.1.4] (inferred from 100% identity to bpy:Bphyt_0794)Predicted SEED Role
"Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)" in subsystem Purine Utilization (EC 1.17.1.4)
MetaCyc Pathways
- purine nucleotides degradation I (plants) (10/12 steps found)
- adenosine nucleotides degradation I (7/8 steps found)
- guanosine nucleotides degradation II (4/4 steps found)
- superpathway of purines degradation in plants (14/18 steps found)
- superpathway of guanosine nucleotides degradation (plants) (5/6 steps found)
- adenosine nucleotides degradation II (4/5 steps found)
- guanosine nucleotides degradation I (3/4 steps found)
- guanosine nucleotides degradation III (3/4 steps found)
- inosine 5'-phosphate degradation (3/4 steps found)
- purine nucleotides degradation II (aerobic) (8/11 steps found)
- ureide biosynthesis (5/7 steps found)
- purine nucleobases degradation II (anaerobic) (16/24 steps found)
- caffeine degradation III (bacteria, via demethylation) (1/7 steps found)
- theophylline degradation (1/9 steps found)
- caffeine degradation IV (bacteria, via demethylation and oxidation) (1/10 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.17.1.4
Use Curated BLAST to search for 1.17.1.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See B2T0B2 at UniProt or InterPro
Protein Sequence (788 amino acids)
>BPHYT_RS03870 xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) (Burkholderia phytofirmans PsJN) MNQHAEPFLKDLKELDDFTQVHVSRPHESAHLHVSGRATYTDDIPTLAGTLHAALGLSSK AHAKIVSISLDKVRATPGVVAIFTADDIPGVNDVGPIIHGDDPILADGLVQYIGQPIFIV VATSHDTARLAARRADIVYEELPAILTAQQARAANQHVLPPMKLARGEADTKIARAAHRE AGEMLLGGQEQFYLEGQISYAVPKDDDGMHVYCSTQHPTEMQHMVAHALGVASHNVLIEC RRMGGGFGGKESQSGLFACCAALAAWKLLCPVKLRPDRDDDMMVTGKRHDFHYTYEVGYD DKGVIDGVTVDMTSRCGFSADLSGPVMTRALCHFDNAYWLSDVTIDGFCGKTNTQSNTAF RGFGGPQGAFAIEYIMDNVARSVGEDSLDVRRRNLYGKTERNQTPYGQIVEDNVIHELID ELEATSEYRARRAAINEFNANNEILKKGMALTPVKFGIAFNVTHFNQAGALVHIYTDGSV LVNHGGTEMGQGLNTKVAQVVAHELGIGFNRIRVTATDTSKIANTSATAASTGSDLNGKA AQDAARQLRERLSAFAAERFGAGNVSASEVRFMHDRVVVGEMIVPFEEVIAKAYVARIQL WSDGFYATPKLYWDQSKLQGRPFYYYSYGAAVSEVVIDTLTGEMRVLRADALHDVGASLN PALDVGQVEGAFIQGMGWLTTEELWWNPGGKLMTHAPSTYKIPTVNDTPPDFRVRLFKNR NAEDSIHRSKATGEPPLLLPFSVFFAVRDAVSAVGDHKVNPPLNAPATSEEILKAVGAVR AATIAARQ