Protein Info for BPHYT_RS03670 in Burkholderia phytofirmans PsJN

Annotation: peptidase U34

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF03577: Peptidase_C69" amino acids 20 to 409 (390 residues), 364.6 bits, see alignment E=3.6e-113

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0754)

Predicted SEED Role

"Probable dipeptidase (EC 3.4.-.-)" (EC 3.4.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.-.-

Use Curated BLAST to search for 3.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T073 at UniProt or InterPro

Protein Sequence (485 amino acids)

>BPHYT_RS03670 peptidase U34 (Burkholderia phytofirmans PsJN)
MKRIFATIFAFVASAQLSLACTTIIVGKKATVDGSILVARNDDGPGITAVNFLYHPPRRD
GYTLRSVMKNKFSYEMPSHLMGYTGSPRGSGSAYDESGFNDAGVGVSATETIVSNARTLS
VDPYVKETGIVEEVIPTIILSQAKSAREGVELLGALVESHGSAEGFGVAFVDSNEAWYLE
NAGGHQWLAMRIPDDSYFVSANQSRLGEFDPDDHNFLSSPNLVGFAQTHGLYDRETEGPF
SFRRAFGRDNEIDVRYNYPRVAQLQKWFTANAADQSVTANGFPTFRRPDHPVAVTDVQRA
LQDYFAGTPSDPYTSANPAATARPISVYRTYQSHVLQTRKGLPEGIANVEYLDLGMTALG
IYLPFYQGAAIPESYRGVTGDSDDSSAFWQFRKVQLLAMQDFAHLAPIVRSRYDALALAI
ADKQLQFEEDYARVAKTDRVEADRMRDRFARGNVDAALAVSRELVNTLVTQLSLRTNQLY
RFPGS