Protein Info for BPHYT_RS03560 in Burkholderia phytofirmans PsJN

Annotation: DNA repair protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 TIGR00634: DNA repair protein RecN" amino acids 1 to 555 (555 residues), 518.1 bits, see alignment E=1.9e-159 PF02463: SMC_N" amino acids 2 to 512 (511 residues), 72.9 bits, see alignment E=2.7e-24 PF13476: AAA_23" amino acids 5 to 153 (149 residues), 43.6 bits, see alignment E=5.6e-15

Best Hits

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 100% identity to bpy:Bphyt_0730)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXB5 at UniProt or InterPro

Protein Sequence (556 amino acids)

>BPHYT_RS03560 DNA repair protein (Burkholderia phytofirmans PsJN)
MLRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGARADANVVRTGES
RADLTAEFETHAQVEQWLDEQALGTTGEDGHHGNTVMLRRVVDANGRSRAFINGTAATLA
QLREVGEMLVDIHGQHAHQLLMRPDAQRELFDTHAGLSDTAASVTRAWRAWREKVQAVEH
AQTRDRELQLERERLAWQLTELDKLAPQPGEWEEVNAEHRRLSHSANLIDGVQGALGALS
ESDEAMITHLSSIVSKVRDLAEIDPALNDVLAALEPAEIQLQEAAYSLSHYAQKLELDPD
RLAQVEKRLDALHSAARKFRLQPQTLPEEHEARRAQLAALDAAADLDSLHAAEAKAKEAF
LTEAKKLSKARAKAGKALGAAVTTGMQELSMKGGSFEVALVPLPEGGAHGLEQVEFRVAG
HAGVPLRPLAKVASGGELARISLALAVIASAASPTPTLIFDEVDTGIGGGVAEVVGRLLH
QLGQQRQVLCVTHLPQVAARGDHHFQVAKAGNGKGGTVSSVTSLDKASRVEEVARMLGGL
EITPTTRKHAKEMLAA