Protein Info for BPHYT_RS03380 in Burkholderia phytofirmans PsJN

Annotation: NAD(P) transhydrogenase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 53 (18 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 209 to 228 (20 residues), see Phobius details amino acids 235 to 253 (19 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details PF02233: PNTB" amino acids 7 to 481 (475 residues), 627.5 bits, see alignment E=7.7e-193

Best Hits

Swiss-Prot: 60% identical to PNTB_RHORU: NAD(P) transhydrogenase subunit beta (pntB) from Rhodospirillum rubrum

KEGG orthology group: K00325, NAD(P) transhydrogenase subunit beta [EC: 1.6.1.2] (inferred from 100% identity to bpy:Bphyt_0693)

Predicted SEED Role

"NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)" in subsystem Phosphate metabolism (EC 1.6.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.1.2

Use Curated BLAST to search for 1.6.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SX78 at UniProt or InterPro

Protein Sequence (484 amino acids)

>BPHYT_RS03380 NAD(P) transhydrogenase subunit beta (Burkholderia phytofirmans PsJN)
MSLNVVTLLYLVASVCFIQALKGLSNPKTARIGNTFGMAGMAIAILTTIALIVKQANGLG
SNLGLGLGLLLVALVVGGAVGAFVAARVEMTKMPELVAAMHSLIGLAAVCIAYAVVSEPA
AFGLVDPENTAPGFLPYGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVVY
AGQHLINLLLAIAMLGFGVIFFLTQSWLPFIIMTLIAFVLGVLIIIPIGGADMPVVVSML
NSYSGWAAAGIGFSLNNPMLIIAGSLVGSSGAILSYIMCRAMNRSFFNVILGGFGNEPGA
AAAGGSAEQRPVKSGSADDASFMLGNAETVVIVPGYGLAVARAQHALKELTDKLVEKGIE
VKYAIHPVAGRMPGHMNVLLAEAEVPYDMVHEMDDINGEFGQVDVVLVLGANDVVNPAAK
TDPKSPIAGMPIIEAYKARTVIVNKRSMAAGYAGLDNDLFYMDKTMMVFGDAKKVIEDMV
KAVE