Protein Info for BPHYT_RS03085 in Burkholderia phytofirmans PsJN

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1435 transmembrane" amino acids 482 to 503 (22 residues), see Phobius details PF00497: SBP_bac_3" amino acids 7 to 216 (210 residues), 103.6 bits, see alignment E=4e-33 amino acids 248 to 465 (218 residues), 84.7 bits, see alignment E=2.4e-27 PF00989: PAS" amino acids 526 to 635 (110 residues), 25.1 bits, see alignment 5.3e-09 TIGR00229: PAS domain S-box protein" amino acids 526 to 643 (118 residues), 45.5 bits, see alignment E=3.8e-16 PF08448: PAS_4" amino acids 531 to 639 (109 residues), 40.3 bits, see alignment 1.2e-13 PF00512: HisKA" amino acids 788 to 853 (66 residues), 71.6 bits, see alignment 1.6e-23 PF02518: HATPase_c" amino acids 900 to 1014 (115 residues), 108.4 bits, see alignment E=9.9e-35 PF00072: Response_reg" amino acids 1170 to 1282 (113 residues), 79.3 bits, see alignment E=8.5e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0633)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXL3 at UniProt or InterPro

Protein Sequence (1435 amino acids)

>BPHYT_RS03085 histidine kinase (Burkholderia phytofirmans PsJN)
MTVGVLANSWLPFDALQDGQLTGMSVDYLRALVGPNVVIEAKAFPDLPQLLAAACAGQVD
LLTSLARTPERERCLSFTAPYFRSSSSVVVRRDSNSYGNPAQLAGARIALEKGFAIERVT
RERFPHAQITTFAATRDALAAVIQGDADVYLGFTAAVQYALSTDEFRGLRVAFEENTKTS
NLRFAVPRIQTALRDQLDRALASMNPADEAAIRMRWLSGNFDAKPVPATPRLALTPQEQA
WLHSLPPLQVGFDNSWAPFSYVDGSGRPAGIAADYLTYLSRTLGVVFNRASTADWPAAIN
SFQRGELAILATASSHDPRLTKARHTSAYESYPLVLVGREDEPAARSLNDFSSRRIVVSS
HVAGALALAFQRIPADHVVVAPSLDEALKMVESGEADVLVGNVAATDILLKQQYGGVLKI
LGTVGDSDALDFAVRPDLSPLAGLIDRALLAMPPAEKQRIRQKWVTGNAPAAGTWSVTAV
RLLPVLIGVCVVLLITLRAYLLLQREVRLRKKTERELELQLNFQETLMKTVPYPLVAKDL
DGRYLAVNEAYEQACGLSRDAVVGRTSLQVQTWGEANSRILDEMTREMLNGGETAQVELQ
FERGAGNVRHGLFWTRICRGSDGQPACVLGTMVDITDIRRAEMRARETERRLFDVTRSLP
AVVFQLRRTADGAYTFPYISGDARHLLGGRGSLQNVSDQVDFQRVCEEDRAFVLAELERS
AHSETPVNMEFRFAGDQDIKWARAELVPRRESDGSVVWSGYWVDASLEHARSDELARARD
LAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLNADQGEMLGMIHESAGALLQI
LDDLLDYSKIEAGRLTIEAESIDLRELVDNAVGLLAGRAHEKGLKVRVDIGPDVAATLRG
DSVRLRQILFNLLGNAIKFTPQGEVDVCVSVVAEGDGIQTLEMVVEDTGIGIAPEVQAKL
FEPFVQAESSTTRRFGGTGLGLTICRKLIDLMNGSLTLRSEPGSGTCMTVRLAMPVETPR
YSVNGLRGKRGIVATGDARVAQALMHFGEALGLKLRHVSPDAPELHDRAALAEIDLLFLS
EDVILPADMRPRTRFICLTEKPKPTGYRILDDNVRVSINPISWRGLGAACAAAMTGLPSA
GPRSAAMSRTPEFGASPPDRERAIASGRLILVAEDHPVNQELIRHQLALLGFACDVANDG
AEALAALEHTSYGCLITDCHMPNVSGYELTRRIRENEQDGAYRLPILGITANTAPEDLNL
CRDAGMDDSLVKPTRLATLRDYLSRWFGTDSAWQAAPSEAVSTPAVAVPDVRGGAQPFVP
VDLAHMTQLWGSESTVKALLDSFVSSVREDVQSLSPLLERVESERTEVERVREWLHRVAG
AASVLQYPPLLDALEDYRREITIKPPERVRDDGMLLIDKCNAMLDGIEQQAALLV