Protein Info for BPHYT_RS03070 in Burkholderia phytofirmans PsJN

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF00072: Response_reg" amino acids 14 to 124 (111 residues), 66.2 bits, see alignment E=2.9e-22 PF00196: GerE" amino acids 160 to 215 (56 residues), 43.1 bits, see alignment E=2.5e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0630)

Predicted SEED Role

"Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXL0 at UniProt or InterPro

Protein Sequence (234 amino acids)

>BPHYT_RS03070 LuxR family transcriptional regulator (Burkholderia phytofirmans PsJN)
MRDTAEVSTPVRAIIADDHPLVLLAIENLMSGYPNMEIVGRAADATELFAEIDRSSCDLV
LMDLYMPGGSDGSGLEAVRQFKTRYPDIALVVLTMETEAAELQKVISLGVEGLVSKRDRI
DLIHVAVITALARECYVGPAVRALIADATAIQRLDYVRKVLSRRELEVFTQYASGYGVTE
IAARLERSVKTISAQKCTAMRKLALRSDAELFRFAVEYGVIPEERIPKRRCAGQ