Protein Info for BPHYT_RS03060 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 22 to 46 (25 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 240 to 265 (26 residues), see Phobius details amino acids 271 to 294 (24 residues), see Phobius details amino acids 306 to 329 (24 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 390 (361 residues), 127.3 bits, see alignment E=3.4e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0628)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXK8 at UniProt or InterPro

Protein Sequence (439 amino acids)

>BPHYT_RS03060 MFS transporter (Burkholderia phytofirmans PsJN)
MGSETIVGLGSSGGRTASHRWKVLGVGFAANASFSAAFSGIPTTAVFLRSGYHLGNDGLG
LVLGMLGLGIAVSELPWGLLTDRWGDRRVLLLGLLSTAAALAGLALFVVPSAAHVPSVTM
LALGLLLVGLLGGSVNGSSGRAVMAWFREGERGLAMSIRQTAVPAGGGLGALLLPVLASR
FGFASAYSVLALACAITAAFAWRWLHEPSHADADGAREVRDTAAASGMPARVSPLRDIGI
WRVALGAGALCVPQLAVVTFGTVFLHDFSRAGVLAISVTMAAVQTGAAIARVWSGGWTDR
RGNRRAYMRACSLLTAVLFASLALLTGVAGMHHMAMTAVFAAMVVLGGVSASAWHGVAFT
ELATLAGTSRAGTALAIGNTCVFLTLFLTPLAIPPLLSIGSWPMVWAVTSVCALVALPVF
PRAAREAKVSTARACDATR