Protein Info for BPHYT_RS03030 in Burkholderia phytofirmans PsJN

Annotation: cytochrome C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 92 to 163 (72 residues), 26.3 bits, see alignment E=7.8e-10 PF00034: Cytochrom_C" amino acids 94 to 167 (74 residues), 33.2 bits, see alignment E=1.1e-11 amino acids 202 to 264 (63 residues), 23.4 bits, see alignment E=1.3e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0621)

Predicted SEED Role

"Cytochrome c553-like" in subsystem Terminal cytochrome C oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXK1 at UniProt or InterPro

Protein Sequence (269 amino acids)

>BPHYT_RS03030 cytochrome C (Burkholderia phytofirmans PsJN)
MNQERVFSLRNPWFTVSVGGTIAIAVVGILIGFIWLPSASNAFGDRSLWATICSAAGAPS
SWYGGANLAGPAPSDVVVLPPLRRARADANSIGRGATIATQNCSMCHGVLGTSQVTAPAL
AGQYADVVYKELRDYQNGVRQNAIMQPIIAARSDQDLHDLAAYYASLPRAPAAQTLPTGV
EPDANAVKLAMQGDPQRNIAPCAACHGQLDRKGAAPWLGGQSSIYLAAQMRAFASGARHN
DINEQMRNVARQMTPAEIDSVAKYYAAMQ