Protein Info for BPHYT_RS02865 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details PF14559: TPR_19" amino acids 271 to 312 (42 residues), 26 bits, see alignment 6.2e-09 amino acids 439 to 503 (65 residues), 30.3 bits, see alignment E=2.7e-10 amino acids 545 to 606 (62 residues), 32.6 bits, see alignment E=5.3e-11 PF13432: TPR_16" amino acids 326 to 386 (61 residues), 15.8 bits, see alignment 1e-05 amino acids 399 to 463 (65 residues), 17 bits, see alignment E=4.5e-06 amino acids 439 to 480 (42 residues), 18.2 bits, see alignment 1.8e-06 amino acids 470 to 529 (60 residues), 16.6 bits, see alignment 5.6e-06 amino acids 539 to 598 (60 residues), 29.5 bits, see alignment 5.5e-10 PF13181: TPR_8" amino acids 570 to 598 (29 residues), 13.9 bits, see alignment (E = 3.3e-05)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0588)

Predicted SEED Role

"FIG140336: TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXG8 at UniProt or InterPro

Protein Sequence (613 amino acids)

>BPHYT_RS02865 hypothetical protein (Burkholderia phytofirmans PsJN)
MNLSFVKLFFKRPASAFRVPHAVSARRMLGAAALAVWALAAVPAHAQDPSPDSDDTSVTL
PDPLGPASAEDQKSLPGVPLTSQIVFQVLAAEVALQRDQPAPAYQTYLALARDTHDPRMA
QRATEIALAAQSPSDALAAAQLWQQYAPNSERAAQLDASLLVLSGKPDDASPILARELAR
VPADNRGSAILALQLLLSRGPNRIGGLHVLQDLLKNDMNRPEAQLAIARQQLVSDDAPGA
RKSLEQALALKPDYLPAALTLSQMGPEERKEGIASLEKYVQQNPKSHDARLALAQMYLAS
DRLDDAQKQFEIMHKNNANELTPLMALALIKIQQKNFNEAQAYLTQYAQQAEKTPGADPG
QAYIYLAQLSLEQKNEAAASDWLNKISPSSQQYVPAQITRAQLLAKQGKVDDARKLLANL
PAPDPRDQALLMRTDAAILFDAKRYPEAETRLQQATAQFPDDPDLTYDYAMSAEKTGHYD
VMEAQLRKLIQTQPDNPQAYNALGYSLADRNQRLAEADKLVEKASSLAPNDAFIMDSVGW
VKYRMGDTSDAIRLLRKAYDMQPNAEIGAHLGEVLWKTGNQDQARAAFRDARKLEPDNDT
LVKTLQRLQVNDL