Protein Info for BPHYT_RS02810 in Burkholderia phytofirmans PsJN

Annotation: cell division protein FtsY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 PF02881: SRP54_N" amino acids 104 to 165 (62 residues), 52.9 bits, see alignment E=5.2e-18 TIGR00064: signal recognition particle-docking protein FtsY" amino acids 114 to 384 (271 residues), 331.5 bits, see alignment E=1.9e-103 PF06414: Zeta_toxin" amino acids 181 to 287 (107 residues), 26.8 bits, see alignment E=4.7e-10 PF00448: SRP54" amino acids 186 to 384 (199 residues), 238 bits, see alignment E=1.1e-74

Best Hits

KEGG orthology group: K03110, fused signal recognition particle receptor (inferred from 100% identity to bpy:Bphyt_0578)

Predicted SEED Role

"Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)" in subsystem Bacterial Cell Division or Two cell division clusters relating to chromosome partitioning or Universal GTPases (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXF8 at UniProt or InterPro

Protein Sequence (386 amino acids)

>BPHYT_RS02810 cell division protein FtsY (Burkholderia phytofirmans PsJN)
MFSFFKRFKGSKESDNAPEESQTTPEGSTPTAAVQAPAPVVPAAAPVRVDTPPVAAPSAI
DPEPEPEAFALEETVEVVPPPLPDAGAKRSWLTRLKTGLSKTSSNLTGIFVGTKIDEDLY
EELETALLMSDAGVDATEFLLEALREKVRAERLVDPQQVKTALRTLLVDLLKPLEKSLML
GRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNN
VTVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQD
GAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVY
FIGVGEKVEDLQPFSAEEFSDALLGG