Protein Info for BPHYT_RS02495 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 35 to 61 (27 residues), see Phobius details amino acids 88 to 114 (27 residues), see Phobius details amino acids 133 to 159 (27 residues), see Phobius details amino acids 167 to 196 (30 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details amino acids 250 to 270 (21 residues), see Phobius details amino acids 281 to 303 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 102 to 303 (202 residues), 27.4 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: K02054, putative spermidine/putrescine transport system permease protein (inferred from 100% identity to bpy:Bphyt_0515)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SWZ6 at UniProt or InterPro

Protein Sequence (312 amino acids)

>BPHYT_RS02495 ABC transporter (Burkholderia phytofirmans PsJN)
MSASSDAGSVQPELLVPPVPTPTPRVDGPGRASQLLAWIGVVPFFTFALLFLILPTGFLM
VGAFQDPQGHFTLANFRDLLQPTVMDAYWISFKVSAASSLGGAVIGSLLAWAAVQGKLPG
WIRPTLMTFSGVASNFAGVPLAFAFICTLGRVGLVTVLLKKYLGFNLYSTGFSVLSFSGL
TLTYLYFQIPLMVLIVTPALDGLKREWREACDCLGGTAYQYWRYVALPVLWPSVLGAALL
LFANSFGAVATAYALTGSSLNIVTILLYAQIRGDVMHNQNLGYALALGMVLVTGLSNGGY
IWLRSRAERGRR