Protein Info for BPHYT_RS02325 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details PF11306: DUF3108" amino acids 147 to 363 (217 residues), 72 bits, see alignment E=3.5e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0480)

Predicted SEED Role

"Putative PROLIN-rich signal peptide protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SWW4 at UniProt or InterPro

Protein Sequence (435 amino acids)

>BPHYT_RS02325 hypothetical protein (Burkholderia phytofirmans PsJN)
MSSAPATRRSDHTPPSGPRTGLRVWRWIVVLFIVAVLHWIAAQWVERNRANLNPSDNEHV
PVQVALLTPERIERKPAATASPAPEPAPARHAAASKPRKHVLTALQPAKQAAPAVPVTAS
DVVASAPGAASSANAAPNAAASATGTASTPAAASAPQASPGVKFSVPPSGELQYDTFYNG
VRNQPGTIHWTSNAQSYEMVVSVPLPFVGTFVYSSHGRIDAFGLAPDQYIEKRGRRAEDI
AIFNRTDKKIAFTRTPSTLPLPDGAQDRFSMVMQLASLVRGDPGAYKPGVTRQFFVVDND
SGENWPVETIGDETIRTAQGFLDTRHFKRLPRHDGDLRRIDVWLAPSLGWLPARIVQTEP
NGTQFELVWRGKLNADTGGSAPNGNGDGAAASPDNATGPSAPPASAAMPEVAPSVPVDPA
DPGDTASNTPGIIKP