Protein Info for BPHYT_RS01980 in Burkholderia phytofirmans PsJN

Annotation: diguanylate cyclase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 188 to 205 (18 residues), see Phobius details amino acids 283 to 305 (23 residues), see Phobius details PF02743: dCache_1" amino acids 93 to 264 (172 residues), 49.4 bits, see alignment E=4.4e-17 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 319 to 484 (166 residues), 172 bits, see alignment E=4.6e-55 PF00990: GGDEF" amino acids 323 to 482 (160 residues), 167 bits, see alignment E=3.1e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0410)

Predicted SEED Role

"FOG: GGDEF domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SWP1 at UniProt or InterPro

Protein Sequence (510 amino acids)

>BPHYT_RS01980 diguanylate cyclase (Burkholderia phytofirmans PsJN)
MVTRRPNIVIAISIVLASAILAIAVWVLAQMRDDALRRAQDSVFNVSLLVERDVSRNLEI
YDLSLRAVIDGLKQPGVLELDPAIRQMVLFDGSASAKDMGSILVTDEAGNIKFDSQATPP
RRVNLSDRDYFKVQRDSTNVGLYISHPFVPKVSGKEISIAMSRRITRPDGSFGGVVVGTM
RLTYFRRLFAGMNLGAGGSMALMLSDGTMLMRRPFDPKIIGINLTGTANYSRFTQQPSGD
FFGTAAIDGVERWYAFRHIDMYPLILDVALSTRDIYVEWRHRAWIIGSLIAALDVTIIAL
AVLFSYQLRYRRAAEEELRVLARTDGLTGLNNRRTFEEHAEDEWRRAQRNAWPLSMLLID
VDSFKGFNDLYGHSAGDDALTAVARCISQSVRRPGDTAARYGGEEFAVLLPDTDETGAAF
IAEKIRAAVQALQLRHVASSQHVLTVSIGIATTRGEAFATSRALLNAADDALYEAKDAGR
NRVLSYRTVTHTSPRGGATVTPSTETRNSV