Protein Info for BPHYT_RS01535 in Burkholderia phytofirmans PsJN

Annotation: rod shape-determining protein MreD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 33 to 50 (18 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 97 to 123 (27 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details TIGR03426: rod shape-determining protein MreD" amino acids 12 to 155 (144 residues), 97.7 bits, see alignment E=3.2e-32 PF04093: MreD" amino acids 14 to 154 (141 residues), 65.5 bits, see alignment E=3.1e-22

Best Hits

KEGG orthology group: K03571, rod shape-determining protein MreD (inferred from 100% identity to bpy:Bphyt_0324)

Predicted SEED Role

"Rod shape-determining protein MreD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1M0 at UniProt or InterPro

Protein Sequence (170 amino acids)

>BPHYT_RS01535 rod shape-determining protein MreD (Burkholderia phytofirmans PsJN)
MNRPQYILQPVNPYFISFSLAAAFLLNLMPWGRLAGVPDFVALVLLFWNVHQPRKVGMGI
AFLLGLLMDVHNASLLGEHALAYTLLSYGAITIHRRVLWMSLGVQTFAVMPLLVVAQLVP
FVIRLLTGAAFPGWGYLIDGFVEAALWPVTSVLLLMPQRRPADPDDTRPI