Protein Info for BPHYT_RS01375 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 PF00005: ABC_tran" amino acids 23 to 166 (144 residues), 104.5 bits, see alignment E=7.6e-34

Best Hits

Swiss-Prot: 34% identical to MNTA_SYNY3: Manganese transport system ATP-binding protein MntA (mntA) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: K02074, zinc/manganese transport system ATP-binding protein (inferred from 100% identity to bpy:Bphyt_0293)

Predicted SEED Role

"Zinc ABC transporter, ATP-binding protein ZnuC" in subsystem Transport of Zinc

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0Z6 at UniProt or InterPro

Protein Sequence (273 amino acids)

>BPHYT_RS01375 ABC transporter (Burkholderia phytofirmans PsJN)
MCHGSEVLVVEGVSVSFPGHTVLHGVGFTMEAGQFCGLIGSNGSGKTTLLRTILGFQKPD
AGRIRINGAGGRASIGYVPQQIVLDPYLPLRARDLVALGLDGRRIGLPLPSRRRREAVES
TLQAVEAQSFADQRMGDLSGGQQQRVLIGHALIRKPRLLLLDEPLASLDVRSVAGIVGLL
HRLCVEQGIAVLLSAHDMNPLLPVMDRIVYLANGHAASGSTQEVVRSEVLGRLYGYHIDV
VRVHGRVLVIAAGSPDKSRAQHPHDPVHVARIP