Protein Info for BPHYT_RS01120 in Burkholderia phytofirmans PsJN

Annotation: plasmid partitioning protein ParB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 694 PF02195: ParBc" amino acids 2 to 71 (70 residues), 31.1 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 90% identity to bxe:Bxe_C0477)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (694 amino acids)

>BPHYT_RS01120 plasmid partitioning protein ParB (Burkholderia phytofirmans PsJN)
NIRAKGLLQNLVVHEMKGGRGKQRKYGVCAGQRREAALDLLYAQKHIAADYPVPVRIVSD
GEALAISLIENSEREGLDPFDVLRAYRMLAEEGRSVDYIAALFSASPLTVKRRMKLANVS
PRLLGLLREDAITLDQLAALALADDHETQEHIWFDANEWQRQPNYLRQAITRAEIDASRS
RLVRFVGLAAYEAAGGYVRRDLFSDDENAGYIADAELLQKLAAQKLDAAAEEVRAEGWGW
IETRVERDFLELNRYGRLRPVQRPYTGNEQQQMDALTAQQDELAEKLEALSEDDESAYEE
ADRLNEEIERVNAALVALESVALVWDETQMAGAGAFVIVGPQGELVIERGLVRREDASVL
EAAGADVTGTPEAQAHDPVSAQAPKVRPIHSAKLCQRLTAHRTAAIHAELVAQPTVALAA
LLHYLVPKALPEHFGRASTPDFLALTGTNNQDSLLRAADDLGTSPAWSAVEAQRTRWIAE
LPAKRIDLLPWLVQQDPGTTLLDLLAFCTGTLLDGITGEERPHAINALAGALNLDMTRYW
TPTRATYFDHVSKARIAEVVATAVSPKAAADLEKMKKADAAAAAELRLAKVAWVPEVFTD
REIPAAPAWGVRDDEGDEDDGDNEGDADDDGAEGTAAQDGDDADTEPDTGTGVEHINDTL
PDMAAVNAPTSPHSPWPFPTADGVSIGQSGSRVA