Protein Info for BPHYT_RS01080 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 39 to 58 (20 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 219 to 378 (160 residues), 154 bits, see alignment E=1.5e-49 PF00990: GGDEF" amino acids 223 to 377 (155 residues), 138.6 bits, see alignment E=8.3e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0233)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0U2 at UniProt or InterPro

Protein Sequence (379 amino acids)

>BPHYT_RS01080 hypothetical protein (Burkholderia phytofirmans PsJN)
MITIDPRTVILLTSVMSAIMSSVLFSVYRDLHSNINGIGRWALGSLILAVTAVLFGLREV
IPDWLSVIVANAGLLCGVGLWLVGTQLFYGRKPSWASVSAATILTMACVSWWLLVEPAYT
LRLTSITGCLLGLYGVQLLLVVRYGVRHSSTYFLAFVLLLQIVVLLIRGVTSLLPTLVQS
NFLSPDLIQAIYFATYSFVTLLLALGFVMVATHRLNMELKWYATRDPLTGVFNRRAFAEI
YQREYQVAQRTGGTLALLIVDLDHFKAINDKYGHDVGDKVLVDFCRRANAVLVNGTSMAR
LGGEEFAVLLRGVSLEDASAQAERIRLSLLQDGDNELPGYTCSVGVATTAKDGSALEQLL
RVADDALYHAKREGRNRVE