Protein Info for BPHYT_RS01060 in Burkholderia phytofirmans PsJN

Annotation: alcohol dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 PF00034: Cytochrom_C" amino acids 10 to 106 (97 residues), 22.1 bits, see alignment E=3.3e-08 amino acids 167 to 276 (110 residues), 21.7 bits, see alignment E=4.3e-08 amino acids 303 to 389 (87 residues), 44 bits, see alignment E=4.9e-15 PF13442: Cytochrome_CBB3" amino acids 302 to 385 (84 residues), 37.7 bits, see alignment E=2.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0226)

Predicted SEED Role

"Putative diheme cytochrome c-553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0T6 at UniProt or InterPro

Protein Sequence (417 amino acids)

>BPHYT_RS01060 alcohol dehydrogenase (Burkholderia phytofirmans PsJN)
DANDTALIRRGAYLAVLGDCAACHVAKDGKAFVGGLPITTPIGTLYTTNITPDPATGIGN
YTPSDFERAVRRGIRRDGSPMYPAMPYPSYAHVSDDDVRALYAYFMHGVAPVDSPNRASG
IPWPLSMRWPLTYWRWAFAPKVQPAAHTDIDSATAAGAAHDAALLERGRYLVEGLMHCGS
CHTPRGVGLQEKALGDADGSDYLSGGVIDHYVANSLRGDDLTGLGRWSQADIVEFLRTGR
NPETAAFGGMRDVVQHSSQFLNDTDLLAVATYLKSLPGNHPAGHYAYAAAAGAALAKGDV
SARGAIDYLNSCAACHLSSGKGYRDTFPALAGNPVVNAKDPTSLINIVLNGNTEVGTSRV
PTQFTMPPFGDRLTDAEVANVVTFIRTSWGNHAPDVNADEVAKVRAQTHAPTVARRQ