Protein Info for BPHYT_RS00920 in Burkholderia phytofirmans PsJN

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 PF01695: IstB_IS21" amino acids 12 to 249 (238 residues), 291.2 bits, see alignment E=9.4e-91 PF00308: Bac_DnaA" amino acids 102 to 201 (100 residues), 36.1 bits, see alignment E=9.7e-13 PF00004: AAA" amino acids 104 to 182 (79 residues), 24.3 bits, see alignment E=5.5e-09

Best Hits

Swiss-Prot: 46% identical to ISTB_PSEAI: Insertion sequence IS21 putative ATP-binding protein (istB) from Pseudomonas aeruginosa

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0196)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0Q9 at UniProt or InterPro

Protein Sequence (278 amino acids)

>BPHYT_RS00920 transposase (Burkholderia phytofirmans PsJN)
MTPQLERLTVLCKQLNLLHLPTQIAHLGQMAAKRELGYLDFLEQALKDEAMARAERMRRM
LTRLAGFPAIKTLDEFDFEFVLGVPKALVLELGSLAFVERAENVVLLGPSGVGKTHLAVA
LGYRATQAGFRTRFITAADLLMQLTTALRRNQLEETIKRITKPYRLLIIDEMGYLPMDRE
QANLLFQVVAKRYETGSLILTSNLPFGQWDQTFADDATLTAALLDRLLHHAHVVPISGDS
YRLKEKRQAGMINRIPPPHLNDADDVKRKRNSKEAALS