Protein Info for BPHYT_RS00670 in Burkholderia phytofirmans PsJN

Annotation: acyl-CoA dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 PF02770: Acyl-CoA_dh_M" amino acids 135 to 229 (95 residues), 77.6 bits, see alignment E=1e-25 PF00441: Acyl-CoA_dh_1" amino acids 253 to 395 (143 residues), 80.1 bits, see alignment E=3e-26 PF08028: Acyl-CoA_dh_2" amino acids 264 to 378 (115 residues), 26 bits, see alignment E=1.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0141)

Predicted SEED Role

"Butyryl-CoA dehydrogenase (EC 1.3.99.2)" in subsystem Acetyl-CoA fermentation to Butyrate or Anaerobic respiratory reductases or Butanol Biosynthesis or Isobutyryl-CoA to Propionyl-CoA Module or Isoleucine degradation or Valine degradation (EC 1.3.99.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.2

Use Curated BLAST to search for 1.3.99.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T019 at UniProt or InterPro

Protein Sequence (436 amino acids)

>BPHYT_RS00670 acyl-CoA dehydrogenase (Burkholderia phytofirmans PsJN)
MAQYQQTLQQAHTIDDIGTALADRGLDLGLLARRMRAVSLESDVTGDIAGPPWRPDDVSA
LNMNLVPTRYGGCPALQSLVAQATLMACLGEADASLALALPGPGLAMPPVVALASARQQA
RFFQGFQSGTPRWGAFAITEPDCGSDATAMRTTARKTSRGWALNGTKCFITNGARAGCVI
TFATINRQMGRYGIRAFLVDCNTPGFTVSRIERMAGLRATQLAVLSYADCEVPDDALLVR
GDEKPLDDAFSGAQRSWDYFRPLLSAVMVGTCRRVRADLAAWLDGGGTPVDRHQHVAGVA
ATLLDIDRQITAAWLLCHCTAWKTDRGIVTPMDSSMTKAFASRVAARVTRAAMDLAGIDG
ITACPSLEQAYRDARAFDIMEGTGDLQRLMIARAALRSTPSSWDITEPPSRDTTASDSSP
DIANVRQPGQETSHDA