Protein Info for BPHYT_RS00495 in Burkholderia phytofirmans PsJN

Annotation: S-formylglutathione hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 TIGR02821: S-formylglutathione hydrolase" amino acids 3 to 274 (272 residues), 416 bits, see alignment E=3.9e-129 PF00756: Esterase" amino acids 21 to 268 (248 residues), 237 bits, see alignment E=2.8e-74 PF00326: Peptidase_S9" amino acids 128 to 257 (130 residues), 22.7 bits, see alignment E=6.4e-09

Best Hits

Swiss-Prot: 63% identical to SFGH1_ECOL6: S-formylglutathione hydrolase FrmB (frmB) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K01070, S-formylglutathione hydrolase [EC: 3.1.2.12] (inferred from 100% identity to bpy:Bphyt_0105)

MetaCyc: 62% identical to S-formylglutathione hydrolase FrmB (Escherichia coli K-12 substr. MG1655)
S-formylglutathione hydrolase. [EC: 3.1.2.12]

Predicted SEED Role

"S-formylglutathione hydrolase (EC 3.1.2.12)" in subsystem Glutathione-dependent pathway of formaldehyde detoxification (EC 3.1.2.12)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.2.12

Use Curated BLAST to search for 3.1.2.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZY6 at UniProt or InterPro

Protein Sequence (276 amino acids)

>BPHYT_RS00495 S-formylglutathione hydrolase (Burkholderia phytofirmans PsJN)
MERVEHHASSDGWQDVYQHESTTLGCTMKVGVYLPPQAQHGKVPVLYWLSGLTCTEQNFI
TKSAVQRYAAEHGIAVVVPDTSPRGESVANDPAYDLGQGAGFYVNATQAPWAANYRMYDY
VVQELPALIEAHFPVTAERSISGHSMGGHGALVIALRNPGRYRSVSAFSPIVAPTEVPWG
HKAFTAYLGGDQQAWKQYDTVELIRTAQERLPLLVEQGLSDEFLESQLRPELLRKACEET
GHPLTLNLRPGHDHSYYFIASFIGEHIAHHASALNR