Protein Info for BPHYT_RS00485 in Burkholderia phytofirmans PsJN

Annotation: ATPase, AAA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 PF05496: RuvB_N" amino acids 17 to 137 (121 residues), 48.5 bits, see alignment E=2.1e-16 PF07728: AAA_5" amino acids 50 to 140 (91 residues), 25.3 bits, see alignment E=3.4e-09 PF00004: AAA" amino acids 51 to 156 (106 residues), 50.5 bits, see alignment E=7.6e-17 PF16193: AAA_assoc_2" amino acids 181 to 257 (77 residues), 67 bits, see alignment E=3.6e-22 PF12002: MgsA_C" amino acids 258 to 422 (165 residues), 224.7 bits, see alignment E=1.7e-70

Best Hits

KEGG orthology group: K07478, putative ATPase (inferred from 100% identity to bpy:Bphyt_0103)

Predicted SEED Role

"ATPase, AAA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZY4 at UniProt or InterPro

Protein Sequence (437 amino acids)

>BPHYT_RS00485 ATPase, AAA family (Burkholderia phytofirmans PsJN)
MTDLFTTKPKPPLAELLRPRTLDEFVGQRHLLGAGKPLRLAFEAGKLHSFILWGPPGVGK
TTLGRLAASATDSRFIAISAVLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQ
QDALLPHVESGLLTLVGGTTEHPGLAVNSALLSRAQVYTLEPLSGDELQQLYERARPHLQ
GVTLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKAVVDAAFARVSTSPSLRRFDK
GGDEFYWQLSAFHKSLRGSDPDAALYWLARILDGSGDVSQVTRRMVVMASEDIGNADPLA
LQLALNAAQAYERLGSPEGEIPLAQAVTYLALAPKSNAAYTAWDQAKAFVKSSGSQPVPL
HLRNAPAKLMKQMGYREGYRYAHDEPNGYAAGQTYFPEGVTRPNWYQPTDRGAERTMGER
LAFMRSLDDAAARGTDA