Protein Info for BPHYT_RS00320 in Burkholderia phytofirmans PsJN

Annotation: amino acid ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 30 to 371 (342 residues), 195.4 bits, see alignment E=3.3e-61 PF13433: Peripla_BP_5" amino acids 32 to 354 (323 residues), 44 bits, see alignment E=2.5e-15 PF01094: ANF_receptor" amino acids 52 to 369 (318 residues), 83.7 bits, see alignment E=2e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0065)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZD6 at UniProt or InterPro

Protein Sequence (380 amino acids)

>BPHYT_RS00320 amino acid ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MFSATAAAYFFLAASAAAFQSAAMAADEVTVTVGVAAPLSGNNAAYGKDLLNGVQLAVDS
ANGKKLTIGGKSAHFVVLAQDDQADPKTAVEVAQLLADKKVAVVIGHENSGTTLPASRIY
ANAGIPMITPSATNPTITSQGFSNVFSTIATDAQNAGNAGKYAVEVTKAKRIAVLDDRTA
FGQGEADEFVKAVKAANGNVVDREFTTDKAVEFSAQLTHIKSTNADLVFVATLNPQAAMI
VKRMKQLGIAAQFVGGGGVMEPTFLSLAGGSAEGAMAWEYGEPIASLPGGAAFQSNYEKT
FHTPMLTYAPFAYDATWAAIHAMQAANSPDPTQYLAKLHSQAVDGITGPIAFSDTGALKD
PSSTLYEVKNGKWTPITTKH