Protein Info for BPHYT_RS00075 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1124 PF13555: AAA_29" amino acids 22 to 82 (61 residues), 85.9 bits, see alignment 1.3e-28 PF13558: SbcC_Walker_B" amino acids 979 to 1069 (91 residues), 84.9 bits, see alignment E=3.5e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0015)

Predicted SEED Role

"FIG007317: Chromosome segregation protein SMC-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZ88 at UniProt or InterPro

Protein Sequence (1124 amino acids)

>BPHYT_RS00075 hypothetical protein (Burkholderia phytofirmans PsJN)
MTDMQLPGLDFVADDALSGFRLHQLEVFNWGTFDRRVWTLNPAGKNALLTGDIGSGKSTL
VDAVTTLLVPAHRIAYNKAAGADSKERTLRSYVLGHYKSERNEASGAAKPVALRDSDSYS
VILGRFHNAGYDLTVTLAQVFWMKEPHGQPARLFIGAERALSIATDFAAFGPDISGLRKK
LRALGADVFDSFPPYGAWFRRRFGIENEQALELFHQTVSMKSVGNLTDFVRSHMLEPFDV
ASRMTALIGHFDDLNRAHGAVLKAKRQMESLSPLVEDCERHAQLVSQVEDLRACRDAMKS
YAADLKLRLLDRRIDILAAEWERQDAHVKRLDVKRSAHRVEEAELRRNIAENGGDRLERL
EAEIQSKDAECTRRRQKAQRFDDLAQVAGEQTPEDEQSFLALRRHLTERLDAAQSDEARL
QNDLTEHGVSFRAGRQEHDALSAEIDSLKSRRSNIPAEQIAMRAALCNALALPEADVCFA
GELLQVREDERDWEGAAERLLRSFGLSLLVSDEHYAAVTEWVDKTHLRGRLVYFRVRQSA
RRERPELHRDSLARKLSVKPESPFYEWLEYEVAQRFNVVCCDTQEQFRRETRAITRAGQI
KAPGERHEKDDRHRLDDRRRYVLGWTNTAKIQALEAQSDQSASQLRELGTLISKIQSEQI
ELKTRLNALSLLSEHAEYREIDWRGVATEIADLRDEKARLESASDLLHELTQRLNQVDAA
LVAVEAELDEDKAERTRIEERQRIADDLHMQAQAVLDDPAYSTHRAYFERLADLWSEALG
KHQLTVESCDNRESDMRKWLQDNIDAEDKKVSRQREKIVVAMREYCTAFPLETQEVDVAI
EAAQEYRAMLDTLKADDLPRFEARFKDLLNENTIREVANFQSQLARERETIRERIALINE
SLTQIDYNAGRYIVLEAQLSQDAEIRDFQSDLRSCTEGTLTGSEDVQYSEAKFLQIKQII
ERFRGREGLTEQDRRWSAKVTDVRNWFVFAASERWREDNSEHEHYSDSGGKSGGQKEKLA
YTILAASLAYQFGLEWGAVRSRSFRFVVIDEAFGRGSDESAQYGLRLFAQLNLQLLIVTP
LQKIYIIEPFVASVGFVDNREGRESRLRNLSIEEYREEKGRSET