Protein Info for BBR_RS20475 in Bifidobacterium breve UCC2003

Annotation: KH domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 178 PF01424: R3H" amino acids 103 to 160 (58 residues), 72.8 bits, see alignment E=9.5e-25

Best Hits

KEGG orthology group: K06346, spoIIIJ-associated protein (inferred from 91% identity to bln:Blon_2495)

Predicted SEED Role

"RNA-binding protein Jag"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (178 amino acids)

>BBR_RS20475 KH domain-containing protein (Bifidobacterium breve UCC2003)
MAQDDVKSIDQLNEEADIAADYLEGLLDIADYEGDIEMGVRNNRPTVQIVADDDTDIKHL
IGRNGEVVDALQQLTRLAVQQKTGERSHLIVDVDGFLKRKRQHLRDVALDAIDAVKESGE
PMDLKPMNSFERKVVHDVVRDEGLKSRSHGEEPHRYVTVYLRNKNEDNVEEEEVDDQE