Protein Info for BBR_RS20245 in Bifidobacterium breve UCC2003

Annotation: cation-translocating P-type ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 996 transmembrane" amino acids 93 to 110 (18 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details amino acids 323 to 350 (28 residues), see Phobius details amino acids 771 to 795 (25 residues), see Phobius details amino acids 804 to 827 (24 residues), see Phobius details amino acids 849 to 872 (24 residues), see Phobius details amino acids 901 to 921 (21 residues), see Phobius details amino acids 933 to 953 (21 residues), see Phobius details amino acids 965 to 984 (20 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 39 to 104 (66 residues), 81.2 bits, see alignment 8.4e-27 TIGR01494: HAD ATPase, P-type, family IC" amino acids 131 to 397 (267 residues), 140.9 bits, see alignment E=2.3e-45 amino acids 678 to 791 (114 residues), 114.7 bits, see alignment E=2e-37 PF00122: E1-E2_ATPase" amino acids 160 to 357 (198 residues), 168.4 bits, see alignment E=3e-53 PF13246: Cation_ATPase" amino acids 443 to 529 (87 residues), 79.1 bits, see alignment E=5.2e-26 PF00702: Hydrolase" amino acids 602 to 722 (121 residues), 57.5 bits, see alignment E=6.5e-19 PF00689: Cation_ATPase_C" amino acids 805 to 987 (183 residues), 177.2 bits, see alignment E=6.9e-56

Best Hits

KEGG orthology group: None (inferred from 95% identity to bln:Blon_2469)

Predicted SEED Role

"cation-transporting ATPase PacL"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (996 amino acids)

>BBR_RS20245 cation-translocating P-type ATPase (Bifidobacterium breve UCC2003)
MDDRNDQSAKSATATNGVVESEEVRAQEALLGDTDPSLTSVDDVAKALNVDPSHGLSEEE
AKRRLAKFGPNELASAPPVPKWKKFLAQFQDPLVYLLIAATIISVIAWGIEKANARPGAE
GGEALPFDALVIILILIVNAVLGYMQEAKAEAAVEALAQMTAPQTSVLRGGKVLRINTAD
VVPGDIIVLAEGDSVSADGRLVNAASLRIAEASLTGESVPVGKKPDTLTEAKALGDRANM
IFNGTSVTQGTGRAIVTGTGMNTQVGKIADMLSATEDEKTPLQKEMDYVSKILGIAVCII
AVVVLVALAVLEGFNDVHDVIDSLLLAVSLAVAAVPEGLAAILTVVLALGVQRMAAHNAI
VKKLHSVETLGSASVICSDKTGTLTRNEMTVERVVTPSGEVQITGTGYAPEGRMVMAGGV
DPESDQAKTIADEVIATLVAGTLANDGELRQENGKWEIVGDPTEVSLVVAARKVKADHKV
SRYTRVGEIPFTSERKRMSIIAKDDTDSGKLTVFAKGAPDVLLSYCSRIRVGGQVRKLTE
GDRQSILATVERLSSEAYRTLGQACRPLETSSLADVPGVSVNAAGQVADIAEQSEAIETD
LIWNGMVGIIDPPRTEVRDSVAEAHRAGIRTVMITGDHPLTAARIASDLGIIAKDGKALT
GDQLDQLPDEAVLDKATAEVSVYARVAPEHKLKIVESLQRQGNIVAMTGDGVNDAPAVKS
ADIGVAMGITGTEVTKQSAKMILADDNFSTIVAAVREGRVIFDNIRKFLRYLLSSNVGEV
FTVFLGVVLAGFLGIRQPESVGVAVPLLATQLLWINLLTDAAPALAMGVDPQTDDVMGRK
PRKMTDRVIDASMWGDIIYIGVIMAIVTLIGMDMHLSGGLFTDRSVDAIGHEAQMTEART
MGFTILVFAQLFNALASRSHLQSVFVGLFSNKWLWGAIGLSVALQLVVVYVPFLNGPFGT
VALSPMAWVECIGLAAIVLIASELRKIVLRAMAKRQ