Protein Info for BBR_RS20070 in Bifidobacterium breve UCC2003

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 69 to 95 (27 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 106 to 273 (168 residues), 51.1 bits, see alignment E=7e-18

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 99% identity to bln:Blon_2442)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>BBR_RS20070 sugar ABC transporter permease (Bifidobacterium breve UCC2003)
MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWIGLKNYTKA
LKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIIL
GYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEA
AAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALN
ITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA