Protein Info for BBR_RS20060 in Bifidobacterium breve UCC2003

Annotation: DUF624 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 136 to 161 (26 residues), see Phobius details amino acids 166 to 189 (24 residues), see Phobius details PF04854: DUF624" amino acids 21 to 90 (70 residues), 51.6 bits, see alignment E=4.2e-18

Best Hits

KEGG orthology group: None (inferred from 92% identity to blb:BBMN68_1441)

Predicted SEED Role

"4-hydroxybenzoate polyprenyltransferase and related prenyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>BBR_RS20060 DUF624 domain-containing protein (Bifidobacterium breve UCC2003)
MNWLAPDSKFMRAWSNLIDGIWVNILMLVTSIPIITIGAALTAGHDACRRSIEGEGKGVT
ANYFRSFKANFVKATLLWLPFLVVLIALAWSWIVLQFTPLLIIKFALTIIWLIGFEWVFA
LQARFENTVAGTLKNAFIFGISHIAMTAALVVVDAVFVALLVGSWFYMPGGLFLLVILGY
GTMLMLHIPVTERVFKPYLQQ