Protein Info for BBR_RS19815 in Bifidobacterium breve UCC2003

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 322 to 343 (22 residues), see Phobius details amino acids 365 to 390 (26 residues), see Phobius details amino acids 410 to 433 (24 residues), see Phobius details PF02687: FtsX" amino acids 323 to 431 (109 residues), 43.5 bits, see alignment E=1.4e-15

Best Hits

KEGG orthology group: None (inferred from 78% identity to bll:BLJ_1895)

Predicted SEED Role

"ABC-type antimicrobial peptide transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (486 amino acids)

>BBR_RS19815 ABC transporter permease (Bifidobacterium breve UCC2003)
MFVLSNAWRALMRSKGRTTLTAFITLAVTFGTVAGLAIVQENTTAHTTTYNSQKANMAIR
PSAATWKKVSATDSATTKHYMTWSSYTDYASAIQTAGTTLDFTVTGTVPARVSGDLKALD
GGSLGSASDDKTGGQLVWRAFWTKDAAKASDLGTFEIVDGKGLSYNNKSANPDTTGALVS
EAFAKANNLKVGDTFKVATATSASDTAELKVRGIYKYTSESTVDNPVVAARNRENAIFTN
YQTFSKAGLDPQYSNETASGWELPDLNVVFNVTDSATYDSLLKTLKKAKLPAKGYTISSP
SLEAYTKSLEPLDTLAARAKTGVIVLLTVGGVLLLALVLLAVWTPKRNDEIGMALVSGVT
RGRLGWQFMLEVFFATLPFYVIGLVGGAFAAKPIGAALISGHTTAVTSSLIWQMVWGGLG
AILVLAILAALRLAFFSAAKLFAADGDWGTVSETETIEEADDEVAELGKAVTPTTTTTND
DAEAKA