Protein Info for BBR_RS19745 in Bifidobacterium breve UCC2003

Annotation: LTA synthase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 transmembrane" amino acids 46 to 70 (25 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details PF00884: Sulfatase" amino acids 367 to 666 (300 residues), 139.5 bits, see alignment E=7.7e-45

Best Hits

KEGG orthology group: None (inferred from 68% identity to blj:BLD_1565)

Predicted SEED Role

"Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (750 amino acids)

>BBR_RS19745 LTA synthase family protein (Bifidobacterium breve UCC2003)
MDDIQNDQEPSAPETGTDLEKTGVPAVPSNQDGDQQNSKLPLPFALNFSLLMASRPMSTL
AKAVSLLYALLKKRPKCPYTLYVVVLALIDSAAVLFIQWGMYKEPTYADPDAIDANTKLF
DSIPGQLTKFVSQMWMEQKYIWLLNFLVLGMVHLALVFVLNRFWVATAIFSIVMSVFAVA
NSIKVSLRNEPVIPSDLGFFSSGNGGEITSFIPKNRQSLVNGTITMLIWLTIICLALQLI
DGRRCVIPCHWWRPFRNVKTIIGNCIRIIAAVLSVTLLWSFTWNLGINDSWSYNWAKSLG
DNPKPWSTVADATGNGPTMNFLRLAHTKTMDKPEDYSEETMAALAKRYKKSAKITNESRA
NKLTDNTVIMILSESFSDPTRVPGITFTEDPMPNIRALKNTTTAGLMLSPSISGGTANIE
HQALTGLSLALFDNSMQSPYQELVPHQKSPYTFNQIWNSVYGKNGSVAFHPFYKHMYLRD
SDYKKFGFSKLYTLDSKPEITHQDHLGTSPYVSDAASYQNVLDALGNSDHAQFIQLVTMQ
NHTPYDDYYPDNQFREADVSELSDDEKWDIDSYAKGVDITDQATEDFLNQLNSTDKPITV
IFYGDHLPGVYNTAAADENNAIPLHETDYFIWSNQASVSAGTKLDSQTSSYTSSNYFMAL
AAEHLDAKVSPYLAMLTQAQTQIPAISRLVSSNASWGDGSTVYLDAEGNHVTSKNLSKEA
KQMLHDYRLVQYDMTKGKNYLSNYGFFDVQ