Protein Info for BBR_RS19665 in Bifidobacterium breve UCC2003

Annotation: ATPase AAA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 PF01695: IstB_IS21" amino acids 42 to 258 (217 residues), 200.7 bits, see alignment E=4e-63 PF00308: Bac_DnaA" amino acids 117 to 211 (95 residues), 25.2 bits, see alignment E=2.1e-09 PF00004: AAA" amino acids 119 to 188 (70 residues), 22.8 bits, see alignment E=1.6e-08

Best Hits

KEGG orthology group: None (inferred from 89% identity to blb:BBMN68_1336)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>BBR_RS19665 ATPase AAA (Bifidobacterium breve UCC2003)
MGIHRPPVVMPDMKRRRASTGEKIETIMNLARRLPLTRQILADQLANATPTQMEFVEEWM
NAELESRERSKRSRLLKQAGFPADKELDGYDWTPIRFPVDYGRQRIESLEFISGHEDLVL
FGPPGTGKTHLAIALGRNACRRGMPVRYHTAASLVMRLLRAQTDNRLDRELAMIGRTPLL
IIDELGYVPIDEEGSRLLFQVVTNAYETQSIIYTTNIEFSGWGRIFGDPNMAAAIIDRTV
HHGRMIRFEGESWRKTHALMQ