Protein Info for BBR_RS19310 in Bifidobacterium breve UCC2003

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 141 (18 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 189 to 189 (1 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 343 to 365 (23 residues), see Phobius details amino acids 377 to 400 (24 residues), see Phobius details amino acids 407 to 426 (20 residues), see Phobius details PF07690: MFS_1" amino acids 63 to 392 (330 residues), 76.8 bits, see alignment E=1.6e-25 amino acids 255 to 430 (176 residues), 53.9 bits, see alignment E=1.5e-18 PF11700: ATG22" amino acids 151 to 426 (276 residues), 148.1 bits, see alignment E=3.7e-47

Best Hits

KEGG orthology group: K06902, MFS transporter, UMF1 family (inferred from 93% identity to blm:BLLJ_0280)

Predicted SEED Role

"FIG00534652: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>BBR_RS19310 MFS transporter (Bifidobacterium breve UCC2003)
MTNSTNIHEPTGAESQSTVPPNGKLTAREKKWIVYDVGNSAFVLLSTAVIPIYAKSLMPA
DGNIVSAWGYAQTIASLVIALLMPLLGSIADVQGMKIKFFLGFFGTGVVTCCAMALPLTW
LPFLIVYILATIGLNGSLTFYDSMLIDTTSNERMDKVSSHGYGWGYIGSTVPFIFCIALI
FGGPSLFGWSTVACTRASFIITAIWWVAFTIPLLTSYRQVHYRATRDQLGSAVRGTFSEL
AGTFGKIVKNKPLWMFMIAFFFYIDAVNTVISMSTSYGAELGIDSTQLVVALLVTQFVAF
PCAILYGRLSGRFGSKTMITAAVVAYMCIVLFAAFFLKSAAEFWILAILVGMFQGGIQAL
SRSYYGKIIPKDHANEYYGFYDIFGKTASILGTFLVATTTSITGNASLGVLSIAILLVLA
FVFLLLQKDPTQA