Protein Info for BBR_RS19135 in Bifidobacterium breve UCC2003

Annotation: 50S ribosomal protein L10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 PF00466: Ribosomal_L10" amino acids 1 to 98 (98 residues), 98.9 bits, see alignment E=7.9e-33

Best Hits

Swiss-Prot: 98% identical to RL10_BIFLO: 50S ribosomal protein L10 (rplJ) from Bifidobacterium longum (strain NCC 2705)

KEGG orthology group: K02864, large subunit ribosomal protein L10 (inferred from 98% identity to bln:Blon_2267)

Predicted SEED Role

"LSU ribosomal protein L10p (P0)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (173 amino acids)

>BBR_RS19135 50S ribosomal protein L10 (Bifidobacterium breve UCC2003)
MKRPEKEAVVAQLTEEFRNADAVYLTEYRGLTVPQISDLREKLGRDTSYTVAKNTLARIA
AKEAGIEGLDEILAGPTAITFVKGDFIEAAKVIRDFAKDNKALVIKGAAADGTVYDAEGA
KKLADLKSRPQLLAEFAGDVKASMAKAAYLFNALPTKAVRTIDALRDKQEKAA