Protein Info for BBR_RS18950 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 41 to 61 (21 residues), see Phobius details amino acids 73 to 89 (17 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 121 to 143 (23 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 225 to 242 (18 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details PF14256: YwiC" amino acids 14 to 137 (124 residues), 109.2 bits, see alignment E=8.8e-36

Best Hits

KEGG orthology group: None (inferred from 81% identity to bll:BLJ_1755)

Predicted SEED Role

"FIG00424942: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>BBR_RS18950 hypothetical protein (Bifidobacterium breve UCC2003)
MTAQRTTRKRDWFDNQPGAWVMVMLPAAAGFIIGGPNLDTLWLLAIWALCYCVQFSAAHW
FKAHFSHRYLPPMIAYTVALTVIGLPFLITHTGILRWAPLYIALVALSMLSSWLRKERSL
WGNAVSVIAASTMATVIASFGSAAKTACAIPLNAAQASCGADADAARAMIRNMPGFSQIF
EPRAWWPAGSLPMNGLIATALFALMQYSSVLVVKTMIRERGKRSYVAASWIWHVMLVALT
IVAGHNPFLITMSVLLLARAIALPVAARYRTMKPVVTGITEAFASLIAFGCILAAVLM