Protein Info for BBR_RS18625 in Bifidobacterium breve UCC2003

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 367 to 392 (26 residues), see Phobius details amino acids 477 to 505 (29 residues), see Phobius details amino acids 517 to 538 (22 residues), see Phobius details amino acids 550 to 572 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (574 amino acids)

>BBR_RS18625 alpha/beta hydrolase (Bifidobacterium breve UCC2003)
MTRITVRRVLNIAAIAVVIALVFSLLGWAMMPQWSTRPYSDHIAVSSPDPAIAPAHADIP
HEGGYRTRETKLSIEVDDGVTLPAILREPIDAPGSRPACLFIHGSGTSGAEDFGDIANAM
ASAGIVTLVPAKRNDNYTVLHRDYQRFAREYSSSLDVLRSTAGVDPAKTGIYAESEGTWI
STILASKRQDIAFAVLTSAPVFKGREQMAMAVSAYMHEAGAPAPVVKDTAKLMSLNYAPF
DLAYADFDADHYLRSLTMPLLVNYGAYDTAMPIEQGAQRIIDAARSAGNENVTVRYFVGN
HQMRAGKGLFTLNLPLAQGYTQALENWVNGIAAGAQADGWATPQIAGVHPHQQFAAPQQT
KSGIIGSLGVLAGIMIAGPVLMLIAVILGIAMDIVDWLRMRGALGRRVPGRNMPVGWNQP
YRRDAGTHVDDDGNRHRRRNAIVVDGNRLYMLRDRRAMHANPVLAWRAMPRGVAGPIAGL
GVAIMVITVLLYGYMGAVGVAAVYVMPHPRLFGIGWRVLQALTVVLVLLFAVVAERLWRH
RADIMGARRAAGIIMVVAALATCTTLAFWGLFSL