Protein Info for BBR_RS18550 in Bifidobacterium breve UCC2003

Annotation: universal stress protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF00582: Usp" amino acids 5 to 143 (139 residues), 72.3 bits, see alignment E=3.1e-24 amino acids 159 to 288 (130 residues), 70.9 bits, see alignment E=8.1e-24

Best Hits

KEGG orthology group: None (inferred from 96% identity to bln:Blon_2144)

Predicted SEED Role

"Universal stress protein UspA and related nucleotide-binding proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>BBR_RS18550 universal stress protein (Bifidobacterium breve UCC2003)
MINDKAILVGVDGSHASYKATWWAANYAKHAGLTLQIVCAYSLPSYAAVSFDATYTAMGD
DNAAHSDAQEILSKAKAIADEQGVEAATLIVTGDPASVFVELSRNYNLIVIGNRGKGGLA
ERLLGTTSSSLPAYAYCPIVVVPYTDDDGNLMHLNNTITKVAVGSDESKWGLKALEIAAD
FAAVWGAELDVMSAVPNLKGVDGEDAVMESYKEDLEVRIKPLQEAHPDLKINKQIVSGPA
VSALTKASFDHDVVVVGSRGRGGFTGLLLGSTSQGLLQHAAGPVYVVPRKYVEAAESRLD
TVPSSPAEVPTKSLEEIAGVEEIPVTKAEPEVAQKIEETIDPDRQ