Protein Info for BBR_RS18515 in Bifidobacterium breve UCC2003

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 274 to 296 (23 residues), see Phobius details amino acids 317 to 343 (27 residues), see Phobius details amino acids 373 to 396 (24 residues), see Phobius details PF02687: FtsX" amino acids 278 to 396 (119 residues), 39.5 bits, see alignment E=2.6e-14

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 99% identity to bln:Blon_2138)

Predicted SEED Role

"ABC transporter membrane-spanning permease, Pep export, Vex3" in subsystem Streptococcus pneumoniae Vancomycin Tolerance Locus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>BBR_RS18515 ABC transporter permease (Bifidobacterium breve UCC2003)
MMSMNVWKRATLAIVRKPVRSGIIGLLMLMVFTSLVAQVGVSTALRTMSDSIGAGMGIGF
TVSAGENPISAEEASRFSRIPGVTKTAYATKTLAQVDGARPVMPRQGPRLDSDLAMQVSV
LGTTDSSLSEEFQSGLYRLEQGRHISGDGDNVLVHRDFALQNGLSVGSTFRLRQEGRNAT
VRVAGIFSGNVQAQSPLPSDTSENLIYSGRRVTSALTGNDQIGMIRCLSDNPQDLSAAVS
QAKTMAGGKYDVTDDSARLSGVLQSVQTVRDLVRMVLLSVCLADVLVLAMALVFWIRSRI
HEIGTLLALGIGKMRIVAQLAIETGLMAAVAALCSLGTGAMLSGYVSSRLLRDSGVAPLE
SLHVEALPPEQTMLILLLGCAVIAVALAVSCAAVLSKSPKSILSSMR