Protein Info for BBR_RS17985 in Bifidobacterium breve UCC2003

Annotation: helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1354 PF04434: SWIM" amino acids 178 to 217 (40 residues), 25.5 bits, see alignment (E = 1.5e-09) PF08455: SNF2_assoc" amino acids 496 to 842 (347 residues), 179.5 bits, see alignment E=1.9e-56 PF00176: SNF2-rel_dom" amino acids 852 to 1161 (310 residues), 224.3 bits, see alignment E=3.6e-70 PF00271: Helicase_C" amino acids 1172 to 1283 (112 residues), 81.3 bits, see alignment E=1.3e-26

Best Hits

KEGG orthology group: None (inferred from 79% identity to blj:BLD_1914)

Predicted SEED Role

"COG0553: Superfamily II DNA/RNA helicases, SNF2 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1354 amino acids)

>BBR_RS17985 helicase (Bifidobacterium breve UCC2003)
MNNGYGVFGHVPDDASHGGGDSDYEDDNAAWGNGLRRRNPWKSANADGDESMLPDDGDFV
GVDDDGNDDVAFGSAGSLSAEDAVVPYSQSRRPGRSVWFDDEDEINGLNEQGVRQAPIAA
LRRDVETSTSNAVLARARVIARKAASMLIDPTYDENRRTGYAELGAMMRGTTSPSSRYRV
NLQFDLDTGEVAGGDCTCPAYGRGYGICKHMAALALMFCDEPQRFKGYHAGAVRPSRALL
DYMERADKQDAQVRARRRSAVMQRFDGGGTAGRGVSSHRNRTGYGSGMGGYQGLRETVSV
GQVRLTPILSFIDGTWSVEFKIGSAINSSSYVLKSVPQFVRAMTNGDHEDYGQKLAFTHT
PDMLDADSRPLLRFLKSALAIRHAAEQQDRYYGRIAIDRHLTLSETEVASLLVLRESVGV
QLVLDTWFSSQPSPVSVGGEPNLTMHIVRRDSRMFGSEAGYLLTGTPSVETVINGDRESW
LLLAPSEPLAYTSAMMAKSRRKSAAGYRFVRCPKQFGPIAGLIGELFAPDSEGQVIAGDD
SALFARTLLPQLVNVDMLAADDIPRELAELSPAECHVGFYLDRTENGVECEAKARYGNVM
VPLLPAGPSVSADDGGMPVAVPGRDLDTEHLALDVVSEFFSMPEEQRRKLAETRQATAGF
RTPASRAKARARASEAAVINRDDTTQIIRLFDEGLPALHEVGEVFTTPAFDRLIAPKPPS
VKVGLSIKGNLVEISPIADEVPPDEVGALLVSYRRRQRYHQLKDGTLLKLEGANLNTLDT
LVADLDLDEQQLNSGLIELPGGRAFLLDGELPDDGSDVVKDASFTEYIDDLKIIDPKSYE
VPDSLKPILRPYQVEGFRWLNTLCDKGFGGILADEMGLGKSVQLIALLLSRYRKPGSADG
AIVEPSLIVCPASLVYNWAAEFAKFAPSCNAMVVAGTKSERRTAIGRAFRADEPTVLITS
YDLLRRDVDDYTADERRFNVMALDEAQYIKNHTTKIAKAAKAVAADHRFALTGTPIENRL
SELWSIFDFLMPGLLGTYKRFHERYELPISNARAVDSSTEEGRAAAQVNPEAARVSHQLQ
SLVGVFIKRRLKSQVLTDLPDKLETTLTVQLAGEQRKLYAAHEQRLRMQLEHSEEADFNT
SKIRILAELTRLRQICCDPRLLYADAKDQSAKLAAITELVETCVNEGKKALIFSQFTSFL
DLIAERFDAQGLRYYTITGSTPKRKRLELVDQFNADDTPAFLISLKAGNTGLNLTGASVV
IHADPWWNAAAQDQAADRAHRIGQTEDVNVYQVVAKDTIEERILELQHTKSELARQFTDA
SPLADETGTGTTVFAEAPASIATLTRDDLLDLLG