Protein Info for BBR_RS17830 in Bifidobacterium breve UCC2003
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 36% identical to ECFA2_CLONN: Energy-coupling factor transporter ATP-binding protein EcfA2 (ecfA2) from Clostridium novyi (strain NT)
KEGG orthology group: K02006, cobalt/nickel transport system ATP-binding protein (inferred from 97% identity to blb:BBMN68_1803)Predicted SEED Role
"ATPase component STY3233 of energizing module of queuosine-regulated ECF transporter" in subsystem ECF class transporters
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-positive bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (271 amino acids)
>BBR_RS17830 hypothetical protein (Bifidobacterium breve UCC2003) MKIELQALEHAYPGGDKALDGVDLTLDGNEPVAIIGQNGAGKTTLVKHFNGILRPTGGKV LINGIDVNERSTAEWSRSVGYVFQNPDDQLFLESVRKEFEFGPRQIGMGDQDIAHRVDSI AELVGLTKKLDVHPFDLTPTEKKFCTIGAVIMMDPSVVIFDEPTCGQDASGNAHLARIIE RLKAQGRLCITISHDMKFVTANFSHVIVMYHGRVLLDGQTREVFAQTDTLRRSFVTPPPV TRVAQGAGLKETVFSVPAFINAIAQERNHRG