Protein Info for BBR_RS17480 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details PF13399: LytR_C" amino acids 135 to 216 (82 residues), 53.2 bits, see alignment E=2.3e-18

Best Hits

KEGG orthology group: None (inferred from 65% identity to blb:BBMN68_42)

Predicted SEED Role

"FIG00424910: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>BBR_RS17480 hypothetical protein (Bifidobacterium breve UCC2003)
MARDKVTYESYEQDVFDNPPKGPVGVHRGSRSVISRIAPFVIVILVAALCGFGAWAWVTG
EYKNILNLNTSSQTAQTSGTEKKDSSDAKSDSADSSDTKSENTDSSNTQSDSAATDNADQ
SAQQDQAAATVNKATQVRVINATGISGYAGQKADVLQTAGYTSVEAANPTGSVPTSTVVW
YQNEADKATAEDVASTLGISAVEQVQGLAAPITVVLLN