Protein Info for BBR_RS17280 in Bifidobacterium breve UCC2003

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 276 to 296 (21 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 17 to 236 (220 residues), 50.3 bits, see alignment E=3e-17 PF00535: Glycos_transf_2" amino acids 19 to 200 (182 residues), 65.5 bits, see alignment E=5.7e-22

Best Hits

KEGG orthology group: None (inferred from 93% identity to blb:BBMN68_85)

Predicted SEED Role

"probable glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>BBR_RS17280 glycosyl transferase (Bifidobacterium breve UCC2003)
MDTMAEVKNPNTTIDKLALIVTTYKRQQLLEVLFDSILALEQAPWRIVIVDNEQSKQTAD
MVAGFAGKVTGQWGTTVADQSGNEERVVYAPQSENLGGAGGFSAGVAKAYELGAAWFWVM
DDDVAVLPDAIAKLAKWTDKHEVIQGSRFDYDGGPFYWQYDFIVPLGIPNPIAPAAFGPA
KYRVMNTLCFEGGLFSRRVVSEIGLPDPRFFIYWDDTIYGYRASKVTNPIVVPDVVLRRT
REIGNWDIAGMRQLNSTSDMNRYHIMRNRGYMARYFMVYGDFRPMLFALGTVLTAIKEVI
RLVMVDREHVKTGLVQIVKGWWDSRKLMHDPDWKPMPPLK