Protein Info for BBR_RS17240 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 33 to 52 (20 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 144 to 169 (26 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 225 to 249 (25 residues), see Phobius details amino acids 261 to 281 (21 residues), see Phobius details amino acids 308 to 333 (26 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 99% identity to bll:BLJ_1358)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>BBR_RS17240 hypothetical protein (Bifidobacterium breve UCC2003)
MNRAQALSKLNRSDMRNAAAERGTQRIFAWNRAHWIGMVVLIAVLLLLQWSSSMYLMPDE
VLDRAAKNLFVWFPGMVLHWPLVLGITNLILGSIRSGSLSFPLASAIIGPLAFGCTNLRL
RPGFPYRSWAQWWKLMHAESGHQLLVHSLIGSAMLLICYTAVAFICYAIGRYGLRELFVD
PNPQTASGRLLTWIRQDAIRFGCWLATAIMYGLLLALTLRGGMAAMAAALLINFVIPPAL
LVINGIYALRPASLTYPWKSLLFPLACTLVPAPMLMALITVYEDTCPIGSTCTLIGDRYL
SWGSMDQVLHFVIVFAVASFLGFGVVWAVRWIVARRTK