Protein Info for BBR_RS17185 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 19 to 37 (19 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>BBR_RS17185 hypothetical protein (Bifidobacterium breve UCC2003)
MGIMKGLLYRDLGRLRHDWVMLTFVVIGGAMPWISLIRDGIERADAAAATVGLAAALASM
LMIVVPPVISGLVGGDRSDGVLETFRFSGRPMGEYVAEKLLLGTVPVAGYTVVILLVAAR
VIGVTDAGLIAFTLTATVLFCVFTTLGALLTGGNVVIGMLVSVVVLAGLAGSRFVLTWIP
LAAKMMGFVVVAAGLVVVAVAVFDSRFVDTRREL