Protein Info for BBR_RS17120 in Bifidobacterium breve UCC2003

Annotation: DUF4186 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 PF13811: DUF4186" amino acids 12 to 119 (108 residues), 162.5 bits, see alignment E=1.5e-52

Best Hits

Swiss-Prot: 50% identical to YNEG_ECOLI: Uncharacterized protein YneG (yneG) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 89% identity to blf:BLIF_1361)

Predicted SEED Role

"FIG074102: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>BBR_RS17120 DUF4186 domain-containing protein (Bifidobacterium breve UCC2003)
MTANDEQQWIAETLTRLQHSAFRAKFVLTDKDRAYARVKGKATIDRHAHEMLRERVGAAE
PKNDGKQTPWRGHPVFTAQHATATCCRGCIEKWHHIPKGRELTEAEVNRLADLVMAWIER
DLINHPAR